Merge in new changes to AntPost branch #330
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* bigbrain template laplace coords added * bugfix for using L or R template injection * lint --------- Co-authored-by: Jordan DeKraker <[email protected]>
* Wet-run test data * typos & clarifications
* fix dependency versions for snakebids, pulp * poetry lock * Revert "poetry lock" This reverts commit b2f8809. * redo poetry lock * python >3.8 * dropped testing for python <3.8 --------- Co-authored-by: Jordan DeKraker <[email protected]>
* moved import to where it is needed --------- Co-authored-by: Jordan DeKraker <[email protected]>
* Update Dockerfile to latest version with dependencies * Update Dockerfile using the new repo isntead of the old!
run_inference was only accepting a single input image, this makes it accept a list of images too, and makes it so --force-nnunet-model T1T2w grabs both T1w and T2w as inputs.
this didn't affect any workflow computations, just the subsequent dscalar.nii and spec file that would have the wrong curvature map
FIX: input images when using T1T2w model
FIX: hipp curvature was being used always, instead of wildcard
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Many changes to master since the Anterior-Posterior branch was started. Before further development want to merge these changes in.